CentroMiner
Step1: Uploading genome
Genome file (FASTA format)
Step2: (Optional) Uploading TE annotaion file
- This step is optional, but may achieve better result.
TE annotation file (GFF3 Format)
Step3: Setting Algorithm Parameters
- Hover the mouse over the parameter label to see detailed description.
- You may input values outside the range directly in the input box, but may not receive satisfactory result.
Period (monomer length) range to be
consider as centromere repeat
monomer. Default: 100~200
consider as centromere repeat
monomer. Default: 100~200
Max allowed gap size between two
tandem repeats to be considered
as in one tandem repeat region.
Default: 50000
tandem repeats to be considered
as in one tandem repeat region.
Default: 50000
Min size of tandem repeat region
to be selected as candidate.
Default: 100000
to be selected as candidate.
Default: 100000
Submit Job
- Please leave your email here. Once job is completed, we will send the Job ID to your email for retrieving results.
- Click RUN button to submit your job.